Section 1510 deals with rooftop structures, and I would say that this is not so much a rooftop structure, but an integral part of the building. As the whole building is a chiller, there is not a risk associated with use of the roof.
Similar to Section 503.1.1 (below), the code should not be used to prohibit a practical and necessary function of a industrial use.
503.1.1 Special Industrial Occupancies
Buildings and structures designed to house special industrial processes that require large areas and unusual building heights to accommodate craneways or special machinery and equipment, including, among others, rolling mills; structural metal fabrication shops and foundries; or the production and distribution of electric, gas or steam power, shall be exempt from the building height, number of stories and building area limitations specified in Sections 504 and 506.