Just reclassify the construction to Type VB if thats doable, it should have been done that way in the beginning. If the areas work, there should be absolutely no reason to have to permit a single story structure above VB.
The AHJ should be amenable to that as long as you meet all the life safety requirements. I recommend giving them a phone call to walk them through it however.
Edit - you can't use plywood in Type I/II type construction. You would have to use metal deck, concrete or something like DragonBoard (Mag Oxide panel) to achieve a noncombustible and fire rated floor decking.